The three nutritional requirements that are quantitatively the most important for microbes are a carbon substrate, an energy source and an electron donor. These together with the electron acceptor are governed by the enzymes in the cell. The carbon source available to the microbes can either be organic or inorganic. those microbes that require organic compounds as either their sole or principal carbon substrates are classified as heterotrophs, whilst those that require inorganic carbonaceous compounds are classified as autotrophs. Microbes that utilize light as their energy source are described as phototrophs and those that obtain energy form the oxidation of either organic or inorganic compounds are described as chemotrophs. Microbes that utilize organic compounds as their source of electrons are described as organotrophs, whilst those employing inorganic electron sources are described as lithotrophs.
As far as microbial processes are concerned, the effect of temperature on overall reaction rates has received inadequate attention with respect to both process research and process operation. For chemical reactions an increase in temperature usually enhances the reaction rate and, by analogy, it is generally assumed that a similar effect occurs in the case of microbially mediated reactions. As far as microbes are concerned, they exhibit maximum critical temperatures above which growth ceases within two or three degrees.
It has been fruitful to analyze microbial systems that resemble a CSTR (chemical engineering jargon for a Continuous Stirred Tank Reactor). The usual assumptions are: