BIOTECHNOLOGY: AN OVERVIEW
by M. K. Goel, 1994
The following is a table of contents:
Out of all the Natural Sciences out there, modern biology is the most
diversified exhibiting a varied array of subdisciplines. This diversity can be
attributed to the introduction of other scientific disciplines such as physics,
chemistry, and mathematics. This has resulted in a more profound description
of life at the cellular and nuclear level. The newly acquired knowledge in the
field of biology has resulted in great contributions to the health and
welfare of man.
Biotechnology is the application of biological organisms, systems or processes
to manufacturing industries. Biotechnology firms will rely mainly on
inexpensive substrates for biosynthesis, processes that will function at low
temperatures, and will consume little energy. There will be numerous
industrial activities that will be affected by the biotechnological advances
mentioned above. These will include human and animal food production,
provision of chemical feedstocks to replace petrochemical sources,
alternative energy sources, waste recycling, pollution control, agriculture,
and new products to aid in the advancement of medicine, veterinary sciences,
and pharmaceutics. Biotechnology is a relatively new area and will require
skillful control of its development.
There are many areas of application of biotechnology. The table below lists
the main ones from which all others stem:
1) Fermentation technology
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This is, historically, the most important area in biotechnology. There has
been extensive development in progress with new products such as medically
important drugs, solvents, protein enhanced foods, etc. This also includes
research on different types of fermentation designs to optimize the process.
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2) Enzyme engineering
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This area is used for the catalysis of extremely specific chemical reactions,
for the immobilization of enzymes, and to create specific molecular converters
(bioreactors). Products formed include L-amino acids, high fructose syrup,
semi-synthetic penicillins, starch and cellulose hydrolysis, etc.
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3) Waste technology
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This has a long array of historical importance, but now emphasis is on the
coupling of this field with the conservation and recycling of resources.
Examples would include foods, fertilizers, biological fuels.
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4) Environmental technology
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Problems like pollution control, removing toxic wastes, recovery of metals
from mining wastes and low grade ores, are just some of the categories that
fall under this field.
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5) Renewable resources technology
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The use of renewable energy sources, in particular lignocellulose to generate
new sources of chemical raw material and energy - ethanol, methane, and
hydrogen.
- Each of these fields utilizes knowledge from Biochemistry, Genetics, Chemistry,
Applied Microbiology, Chemical and Process Engineering, and Mathematics and
Computer Technology. Also, these areas of biotechnology attempt to use the
best possible catalysts in optimum environment to carry out various chemical
reactions. In the pages to come, some important areas of biotechnology will be
considered in order to achieve a broad overall understanding of basic
principles.
- Plant biomass and, to a lesser extent, animal biomass, represent utilizable
sources of carbon for biotechnological processes. Historically, based on these
sources, there are well known examples, such as the production of alcohol
from grain and cheese from milk. Forests, woodlands, and oceans have the
largest percentages of primary productivity. Agricultural crops represented
a percentage of merely 1/6th to 1/8th that of the sources mentioned above.
Still, from this amount, a major portion of food for man and animals, many
essential structural materials, textiles, and paper products, are derived.
Biomass agriculture and forestry may hold great economic potential for many
national economies particularly in tropical and subtropical regions.
- When considering natural raw materials, there are many that are important to
man in many ways. These are basically carbohydrates of varying chemical
complexity and include sugar, starch, cellulose, hemicillulose and lignin. The
most abundant and renewable natural resource available to man throughout the
world is lignocellulose. Before we can make economic use out of this
product, massive technological difficulties must be overcome. To open up
this structure to wide microbial degradation requires expensive energy
demanding pre-treatment processes. By the use of enzymatic hydrolysis, pure
cellulose can be degraded to soluble sugars which can be fermented to form
ethanol, butanol, acetone, single cell protein, methane and many other
products.
- The primary objectives of biotechnology are to improve the management and
utilization of vast volumes of waste organic materials to be found throughout
the world. The utilization of these wastes will eliminate a source of
pollution, and through the use of biotechnological processes, will convert
these wastes into useful by-products. The largest proportion of total volume
of waste matter is from animal rearing, then agricultural wastes, wastes from
food industries, and finally domestic wastes.
- For each biotechnological process the most suitable containment system must be
designed and then monitored and controlled. The environment in which the
desired biocatalysts can interact with the environment and material supply is
known as the fermenter. Fermenters range from simple stirred tanks to
complex integrated systems involving varying levels of computer input.
Fermenters occur in two distinct types. The first are non-aseptic systems
where it is not necessary to operate with strictly pure cultures of
microorganisms. The other type of fermenter is used for production of such
compounds as antibiotics, amino acids, polysaccharides and SCP. Thus, this
type of fermenter involves considerable challenges on the part of the
engineering team. The object of any fermenter is to optimize the growth of the
organism or of a product produced by the organism. To obtain such
conditions, the following must be taken into consideration: an energy source,
other essential nutrients to satisfy the needs of the organism, a lack of
inhibiting compounds in the medium, a reliable inoculum, and the most
advantageous physicochemical conditions.
- There are two types of fermentation systems: closed or open. A closed
system implies that all the nutrient components are added at the beginning of
the fermentation process and, as a result, the growth rate of the contained
organisms will eventually proceed to zero due either to diminishing nutrients
or accumulation of toxic waste products. A modification of the batch process
is the fed batch system. Here, volumes of nutrients may be added to augment
depletion of nutrients. Overall, the system, however, remains closed and there
is no continuous flow. In contrast to the above types, in the open system,
organisms and nutrients can continuously enter and leave the fermenter.
- To achieve optimization of the fermenter system, the following guidelines must
be closely followed: the fermenter should be designed to exclude entrance of
contaminating organisms as well as containing the desired organisms, the
culture volume should remain constant, the dissolved oxygen level must be
maintained above critical levels of aeration and culture agitation for
aerobic organisms, parameters such as temperature of pH must be controlled, and
the culture volume must be well mixed. The following is listing of the types
of materials that should be used in fermenter construction:
- 1) All materials coming into contact with the solutions entering the fermenter
or the actual organism culture must be corrosion resistant to prevent trace
metal contamination of the process.
- 2) The materials must be non-toxic so that slight dissolution of the
material or components does not inhibit culture growth.
- 3) The materials of the fermenter must withstand repeated sterilization with
high pressure steam.
- 4) The fermenter stirrer system, entry ports and end plates must be
sufficiently rigid not to be deformed or broken under mechanical stress.
- 5) Visual inspection of the medium and culture is advantageous, transparent
materials should be used where ever possible.
- So far, biotechnology has been considered with respect to two characteristics:
obtaining the best catalyst and the best environment. The most effective,
stable and convenient form for the biocatalyst is a whole organism. In most
cases, this could be some type of microbe like bacterium, yeast, or mold.
Originally, these microorganisms were extracted from the natural environment,
but today, scientists can genetically alter these into superior organisms.
This is a practice that is being carried out by most biological-based
industries and is direct result of the close cooperation between
technologists and geneticists.
- Genetic recombination occurs during normal sexual reproduction and consists of
the breakage and rejoining of DNA molecules of the chromosomes and is of
vital importance to living organisms. Generally, there are strong taxonomic
constraints that confine the naturally occurring mechanisms which permit
genetic recombination to take place. In contrast, recombinant DNA techniques
known as genetic engineering offer unlimited opportunities for bringing about
new combinations of genes which at the moment do not exist under natural
conditions. Genetic engineering has been defined as 'the formation of new
combinations of heritable material by the insertion of nucleic acid
molecules, produced by whatever mean outside the cell, into any virus,
bacterial plasmid or other vector system so as to allow their incorporation
into a host organism in which they do not naturally occur but in which they are
capable of continued propagation'. The following are strategies involved in
genetic engineering:
- 1) Formation of DNA fragments: Extracted DNA can be cut into small
sequences by way of specific enzymes, restriction endonucleases found in
many species of bacteria.
- 2) Splicing of DNA into vectors: The small sequences of DNA can be joined or
spliced into the vector DNA molecules by an enzyme DNA ligase creating an
artificial DNA molecule.
- 3) Introduction of vectors into host cells: The vectors are either viruses or
plasmids, and are replicons and can exist in cells in an extrachromosomal state;
transfer normally by transduction or transformation.
- 4) Selection of newly acquired DNA: Selection and ultimate characterization of the
recombinant clone.
- These methods allow totally new functions to be added to the capabilities of
industrial microorganisms. What earlier seemed impractical by microbial
manipulation is now possible. Examples will include the synthesis in
microorganisms of specific animal proteins such as insulin, enhanced ranges
of enzymes, hormones, anti-tumor and anti-viral compounds (interferon), fine
chemicals or bulk chemicals such as ethanol, or creating the ability to utilize
complex substrates such as cellulose and lignin and to produce worthwhile
products from them. Genetic engineering holds the potential to extend the
range and power of every aspect of biotechnology.
- One of the biggest problems facing the world today is population growth,
especially in developing nations. At present there are 4 billion mouths to
be fed and if the growth rate continues, by the year 2000, this number will
exceed 5 billion. Conventional agriculture may not be able to a sufficient
supply of food and, in particular, protein. The search for protein is relently
pursued. Today, new agricultural practices are widespread, high protein
cereals have been developed, the cultivation of soybeans and groundnuts is ever
expanding, etc. After all this, the use of microbes as protein producers has
gained wide experimental success. This field of study has become known as
single cell protein production (SCP) and refers to the fact that most of the
microorganisms used as producers grow as single or filamentous individuals
rather than as complex multicellular organisms like plants or animals.
- There are many reasons why microbes are the prime candidate for SCP
production, some of which include: 1) microorganisms can grow at remarkably
rapid rates under optimum conditions: some microbes can double their mass every
0.5-1 hour, 2) microorganisms are more easily modified genetically than
plants and animals: they are more amenable to large-scale screening
programmes to select for higher growth rate, improved amino acid content etc.
and can be more easily subjected to gene transfer technology, 3) microorganisms
have relatively high protein content and the nutritional value of the protein
is good, 4) microorganisms can be grown in vast numbers in relatively small
continuous fermentation processes using relatively small land area and are also
independent of climate, and 5) microorganisms can grow on a wide range of raw
materials, in particular low value wastes, and can also use plant-derived
cellulose.
- The acceptability of SCP, when presented as human food, depends not only on
its safety and nutritional value, but also on other factors. People don't
usually fancy the idea of eating food derived from microbes. In many cultures,
there are guidelines of what you can and cannot eat. Also, odor, color, taste,
and texture need to be taken into consideration when dealing with peoples'
desires. Thus, if SCP is to be used as direct food for man, then the skills of
the food technologist will be greatly challenged.
- Enzymes are complex organic molecules present in living cells where they act
as catalysts in bringing about chemical changes in substances. The subject
of biochemistry has provided us with a more profound understanding of enzymes.
Although enzymes are only formed in living cells, they can also live in vitro.
The usage of enzymes in industrial processes to aid in different types of
chemical transformations has led to the name enzyme technology. Enzyme
technology embraces production, isolation, purification, use in soluble form
and finally the immobilization and use of enzymes in a wide range of reactor
systems. Enzymes will aid in problem such as food production, energy
shortage and preservation, and improvement of the environment.
- Although many useful enzymes have been derived from plant and animal
sources, it is anticipated that most future developments in enzyme technology
will rely on enzymes of microbial origin. The use of microorganisms as a source
material for enzyme production has developed for several important reasons:
1) There is normally a high specific activity per unit dry weight of product,
2) Seasonal fluctuations of raw materials and possible shortages due to
climatic changes or political upheaval do not apply, 3) In microbes, a wide
spectrum of enzyme characteristics, such as pH range and temperature resistance
is available for selection, and 4) Industrial genetics has greatly increased
the possibilities for optimizing enzyme yield and type through strain
selection, mutation, induction and selection of growth conditions and, more
recently, by using the innovative powers of gene transfer technology.
- Immobilization of enzymes on insoluble polymers, such as membranes and
particles, which act as supports or carriers for the enzyme activity, is a
new and valuable area of enzyme technology. The enzymes become physically
confined during a continuous catalytic process and may be recovered from a
reaction mixture and re-used over and over again, thus improving the economy of
the process. In this way, it has been found that some enzymes that are rapidly
inactivated by heat when in cell-free form can be stabilized by attachment to
inert polymeric supports while in other examples such insolubilized enzymes can
be used in non-aqueous environment. Whole microbial cells can also be
immobilized inside polyacrylamide beads and used for a wide range of
catalytic functions. The variety of new enzymes and whole organism systems
that are likely to become cheaply available presents exciting possibilities for
the future. Present application of immobilized catalysts are mainly confined
to industrial processes, for example production of L-amino acids, organic acids
and fructose syrup.
- We are slowly depleting our fossil fuel energy resulting in the need to seek
out alternative sources of energy. So far, these have included the
harnessing of hydro, tidal, wave and wind power, the capture of solar and
geothermal energy supplies, and nuclear power. There is now a growing
appreciation of biological solar energy systems and biotechnological advances
in this area will soon bring economic reality to selected processes. As fossil
fuel resources are depleted and become increasingly more expensive,
conversion of organic residues to liquid fuels will become a more
economically attractive consideration.
- There are three main directions that can be followed to achieve biomass
supplies: 1) cultivation of so-called energy crops, 2) harvesting of natural
vegetation, and 3) utilization of agricultural and other organic wastes. The
conversion of the resulting biomass to usable fuels can be accomplished by
either biological or chemical means or by a combination of both. The two
main end products that will be formed will be either methane or ethanol
although other products may arise depending on initial biomass and the
processes utilized, for example solid fuels, hydrogen, low-energy gases,
methanol and longer-chain hydrocarbons.
- Although biomass may ultimately only supply a relatively small amount of the
world's energy requirements, it will nevertheless be of immense overall value.
In some parts of the world, such as Brazil and countries of similar climatic
conditions, biomass will surely attain wider exploitation and utilization.
There may still be some disadvantages when comparing it with coal or oil, but
the very fact that it is renewable and they are not must be the spur to further
research. In time, biomass will become much more easily and economically
used as a source of energy for mankind.
- Antibiotics are antimicrobial compounds produced by living organisms and are
used therapeutically and sometimes prophylactically in the control of
infectious disease. Over 4000 antibiotics have been isolated but only about 50
have achieved wide usage. The other antibiotic compounds failed to achieve
commercial importance because of their toxicity to man or animals, lack of
producing the desired effect, or high production costs.
- Antibiotics may function over a wide range of microorganisms and are termed
'broad spectrum', for example chloramphenicol and the tetracyclines which can
control such unrelated organisms as the rickettsiae, chalamydiae, and
mycoplasma. In contrast, streptomycin and penicillin are examples of narrow
spectrum antibodies being effective against only a few bacterial species. Most
antibiotics have been derived from the actinomycetes and the mould fungi.
- Thus, in medicine, biotechnology will have an increasing importance in the
production of new and improved products that will contribute to the
well-being of mankind. Such benefits must not be limited only to the developed
nations and it must be hoped that the new medically related biotechnologies can
be transferred in some form to the more needy developing countries where
disease are still such crippling forces.
- Waste can be considered as any material or energy form that cannot be
economically used, recovered or recycled at a given time and place. Growth
in human populations has generally been matched by a greater formation of a
wider range of waste products, many of which cause serious environmental
pollution if they are allowed to accumulate in the ecosystem. In rural
communities recycling of human, animal and vegetable waste has been practiced
by man for centuries, providing in many cases valuable fertilizers or fuel. In
urban communities where most of the deleterious wastes accumulate efficient
waste collection and specific treatment processes have been developed since
it is impractical to discharge high volumes of waste into natural land and
waters. The development of these practices in the last century was one of
the main reasons for the spectacular improvement in health and well being of
the community.
- Mainly by empirical means a variety of biological treatment systems have
been developed, ranging from cess pits, septic tanks and sewage farms to gravel
beds, percolating filters and activated sludge processes coupled with anaerobic
digestion. The primary aims of all of these systems or biotreaters is to
alleviate health hazards and to reduce the amount of oxidizable organic
compounds and thus produce a final effluent or outflow which can be
discharged into the natural environment without producing any adverse affects.
Biotreaters rely on the metabolic versatility of mixed microbial populations
for their efficiency. The fundamental feature of biotreaters is that they
should contain a range of microorganisms with the overall metabolic capacity to
degrade any compound entering the system. Controlled use of microorganisms has
lead to the virtual elimination of such water-borne disease as typhoid,
cholera, and dysentery in industrialized communities.
- This short report has attempted to analyze some of the important areas of
biotechnology. The focus was on the organism aspects of biotechnology and
not on the more complex areas such as dewatering, drying, and
extraction/purification. We shouldn't expect to much to soon from
biotechnology. There are some very promising results that have been obtained
from on going experiments, but there is still a long way to go. Things like
insulin and monoclonal antibodies should become available quite quickly while
things like biofuels could still take a few decades.